PandemieGrippaleV1, 2020, Analysis, bibRecord, 000241

Phylogenetic analysis of pandemic 2009 influenza A virus circulating in the South American region: genetic relationships and vaccine strain match

Identifieur interne : 000241 ( 2020/Analysis ); précédent : 000240; suivant : 000242

Phylogenetic analysis of pandemic 2009 influenza A virus circulating in the South American region: genetic relationships and vaccine strain match

Auteurs : Natalia Goni [Uruguay] ; Gonzalo Moratorio [Uruguay] ; Viviana Ramas [Uruguay] ; Leticia Coppola [Uruguay] ; Hector Chiparelli [Uruguay] ; Juan Cristina [Uruguay]

Source :

Archives of virology [ 0304-8608 ] ; 2011.

RBID : Pascal:11-0095379

Descripteurs français

Pascal (Inist)
- Virus grippal A, Phylogenèse, Vaccin génétique, Souche vaccinale.

English descriptors

KwdEn :
- Genetic vaccine, Influenza A virus, Phylogeny, Vaccine strain.

Abstract

The first influenza pandemic of this century was declared in April of 2009, with the emergence of a novel H1N1 influenza A virus strain (H1N1pdm). Understanding the evolution of H1N1pdm strains within the South American region is essential for studying global diversification, emergence and resistance, as well as determining vaccine efficacy. In order to gain insight into these matters, phylogenetic analysis was performed using 29 hemagglutinin (HA) gene sequences from H1N1pdm strains isolated in South America. The results of these studies revealed that clade 7 was the dominant H1N1pdm lineage in South America. None of the strains isolated in South America clustered together with the 2010 H1 vaccine strain. Amino acid substitutions P100S, S220T and 1338V were found in almost all HAs of South American H1N1pdm strains.

Affiliations:

Uruguay

Links toward previous steps (curation, corpus...)

to stream PascalFrancis, to step Corpus: 000E95
to stream PascalFrancis, to step Curation: 000F57
to stream PascalFrancis, to step Checkpoint: 000998
to stream Main, to step Merge: 002C52
to stream Main, to step Curation: 002B50
to stream Main, to step Exploration: 002B50
to stream 2020, to step Extraction: 000241

Links to Exploration step

Pascal:11-0095379

Le document en format XML

<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en" level="a">Phylogenetic analysis of pandemic 2009 influenza A virus circulating in the South American region: genetic relationships and vaccine strain match</title>
<author><name sortKey="Goni, Natalia" sort="Goni, Natalia" uniqKey="Goni N" first="Natalia" last="Goni">Natalia Goni</name>
<affiliation wicri:level="1"><inist:fA14 i1="01"><s1>Laboratorio de Virología Molecular, Centro de Investigaciones Nucleares, Facultad de Ciencias, Iguá 4225</s1>
<s2>11400 Montevideo</s2>
<s3>URY</s3>
<sZ>1 aut.</sZ>
<sZ>2 aut.</sZ>
<sZ>6 aut.</sZ>
</inist:fA14>
<country>Uruguay</country>
<wicri:noRegion>11400 Montevideo</wicri:noRegion>
</affiliation>
<affiliation wicri:level="1"><inist:fA14 i1="03"><s1>Departamento de Laboratorios de Salud Publica, Centro Nacional de Referencia de Influenza, Ministerio de Salud Publica, Alfredo Navarro 3051 acceso norte</s1>
<s2>11200 Montevideo</s2>
<s3>URY</s3>
<sZ>1 aut.</sZ>
<sZ>3 aut.</sZ>
<sZ>4 aut.</sZ>
<sZ>5 aut.</sZ>
</inist:fA14>
<country>Uruguay</country>
<wicri:noRegion>11200 Montevideo</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Moratorio, Gonzalo" sort="Moratorio, Gonzalo" uniqKey="Moratorio G" first="Gonzalo" last="Moratorio">Gonzalo Moratorio</name>
<affiliation wicri:level="1"><inist:fA14 i1="01"><s1>Laboratorio de Virología Molecular, Centro de Investigaciones Nucleares, Facultad de Ciencias, Iguá 4225</s1>
<s2>11400 Montevideo</s2>
<s3>URY</s3>
<sZ>1 aut.</sZ>
<sZ>2 aut.</sZ>
<sZ>6 aut.</sZ>
</inist:fA14>
<country>Uruguay</country>
<wicri:noRegion>11400 Montevideo</wicri:noRegion>
</affiliation>
<affiliation wicri:level="1"><inist:fA14 i1="02"><s1>Instituto Pasteur-Montevideo, Unidad de Biofisica de Proteinas, Mataojo 2020</s1>
<s2>11400 Montevideo</s2>
<s3>URY</s3>
<sZ>2 aut.</sZ>
</inist:fA14>
<country>Uruguay</country>
<wicri:noRegion>11400 Montevideo</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Ramas, Viviana" sort="Ramas, Viviana" uniqKey="Ramas V" first="Viviana" last="Ramas">Viviana Ramas</name>
<affiliation wicri:level="1"><inist:fA14 i1="03"><s1>Departamento de Laboratorios de Salud Publica, Centro Nacional de Referencia de Influenza, Ministerio de Salud Publica, Alfredo Navarro 3051 acceso norte</s1>
<s2>11200 Montevideo</s2>
<s3>URY</s3>
<sZ>1 aut.</sZ>
<sZ>3 aut.</sZ>
<sZ>4 aut.</sZ>
<sZ>5 aut.</sZ>
</inist:fA14>
<country>Uruguay</country>
<wicri:noRegion>11200 Montevideo</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Coppola, Leticia" sort="Coppola, Leticia" uniqKey="Coppola L" first="Leticia" last="Coppola">Leticia Coppola</name>
<affiliation wicri:level="1"><inist:fA14 i1="03"><s1>Departamento de Laboratorios de Salud Publica, Centro Nacional de Referencia de Influenza, Ministerio de Salud Publica, Alfredo Navarro 3051 acceso norte</s1>
<s2>11200 Montevideo</s2>
<s3>URY</s3>
<sZ>1 aut.</sZ>
<sZ>3 aut.</sZ>
<sZ>4 aut.</sZ>
<sZ>5 aut.</sZ>
</inist:fA14>
<country>Uruguay</country>
<wicri:noRegion>11200 Montevideo</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Chiparelli, Hector" sort="Chiparelli, Hector" uniqKey="Chiparelli H" first="Hector" last="Chiparelli">Hector Chiparelli</name>
<affiliation wicri:level="1"><inist:fA14 i1="03"><s1>Departamento de Laboratorios de Salud Publica, Centro Nacional de Referencia de Influenza, Ministerio de Salud Publica, Alfredo Navarro 3051 acceso norte</s1>
<s2>11200 Montevideo</s2>
<s3>URY</s3>
<sZ>1 aut.</sZ>
<sZ>3 aut.</sZ>
<sZ>4 aut.</sZ>
<sZ>5 aut.</sZ>
</inist:fA14>
<country>Uruguay</country>
<wicri:noRegion>11200 Montevideo</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Cristina, Juan" sort="Cristina, Juan" uniqKey="Cristina J" first="Juan" last="Cristina">Juan Cristina</name>
<affiliation wicri:level="1"><inist:fA14 i1="01"><s1>Laboratorio de Virología Molecular, Centro de Investigaciones Nucleares, Facultad de Ciencias, Iguá 4225</s1>
<s2>11400 Montevideo</s2>
<s3>URY</s3>
<sZ>1 aut.</sZ>
<sZ>2 aut.</sZ>
<sZ>6 aut.</sZ>
</inist:fA14>
<country>Uruguay</country>
<wicri:noRegion>11400 Montevideo</wicri:noRegion>
</affiliation>
</author>
</titleStmt>
<publicationStmt><idno type="wicri:source">INIST</idno>
<idno type="inist">11-0095379</idno>
<date when="2011">2011</date>
<idno type="stanalyst">PASCAL 11-0095379 INIST</idno>
<idno type="RBID">Pascal:11-0095379</idno>
<idno type="wicri:Area/PascalFrancis/Corpus">000E95</idno>
<idno type="wicri:Area/PascalFrancis/Curation">000F57</idno>
<idno type="wicri:Area/PascalFrancis/Checkpoint">000998</idno>
<idno type="wicri:explorRef" wicri:stream="PascalFrancis" wicri:step="Checkpoint">000998</idno>
<idno type="wicri:doubleKey">0304-8608:2011:Goni N:phylogenetic:analysis:of</idno>
<idno type="wicri:Area/Main/Merge">002C52</idno>
<idno type="wicri:Area/Main/Curation">002B50</idno>
<idno type="wicri:Area/Main/Exploration">002B50</idno>
<idno type="wicri:Area/2020/Extraction">000241</idno>
</publicationStmt>
<sourceDesc><biblStruct><analytic><title xml:lang="en" level="a">Phylogenetic analysis of pandemic 2009 influenza A virus circulating in the South American region: genetic relationships and vaccine strain match</title>
<author><name sortKey="Goni, Natalia" sort="Goni, Natalia" uniqKey="Goni N" first="Natalia" last="Goni">Natalia Goni</name>
<affiliation wicri:level="1"><inist:fA14 i1="01"><s1>Laboratorio de Virología Molecular, Centro de Investigaciones Nucleares, Facultad de Ciencias, Iguá 4225</s1>
<s2>11400 Montevideo</s2>
<s3>URY</s3>
<sZ>1 aut.</sZ>
<sZ>2 aut.</sZ>
<sZ>6 aut.</sZ>
</inist:fA14>
<country>Uruguay</country>
<wicri:noRegion>11400 Montevideo</wicri:noRegion>
</affiliation>
<affiliation wicri:level="1"><inist:fA14 i1="03"><s1>Departamento de Laboratorios de Salud Publica, Centro Nacional de Referencia de Influenza, Ministerio de Salud Publica, Alfredo Navarro 3051 acceso norte</s1>
<s2>11200 Montevideo</s2>
<s3>URY</s3>
<sZ>1 aut.</sZ>
<sZ>3 aut.</sZ>
<sZ>4 aut.</sZ>
<sZ>5 aut.</sZ>
</inist:fA14>
<country>Uruguay</country>
<wicri:noRegion>11200 Montevideo</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Moratorio, Gonzalo" sort="Moratorio, Gonzalo" uniqKey="Moratorio G" first="Gonzalo" last="Moratorio">Gonzalo Moratorio</name>
<affiliation wicri:level="1"><inist:fA14 i1="01"><s1>Laboratorio de Virología Molecular, Centro de Investigaciones Nucleares, Facultad de Ciencias, Iguá 4225</s1>
<s2>11400 Montevideo</s2>
<s3>URY</s3>
<sZ>1 aut.</sZ>
<sZ>2 aut.</sZ>
<sZ>6 aut.</sZ>
</inist:fA14>
<country>Uruguay</country>
<wicri:noRegion>11400 Montevideo</wicri:noRegion>
</affiliation>
<affiliation wicri:level="1"><inist:fA14 i1="02"><s1>Instituto Pasteur-Montevideo, Unidad de Biofisica de Proteinas, Mataojo 2020</s1>
<s2>11400 Montevideo</s2>
<s3>URY</s3>
<sZ>2 aut.</sZ>
</inist:fA14>
<country>Uruguay</country>
<wicri:noRegion>11400 Montevideo</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Ramas, Viviana" sort="Ramas, Viviana" uniqKey="Ramas V" first="Viviana" last="Ramas">Viviana Ramas</name>
<affiliation wicri:level="1"><inist:fA14 i1="03"><s1>Departamento de Laboratorios de Salud Publica, Centro Nacional de Referencia de Influenza, Ministerio de Salud Publica, Alfredo Navarro 3051 acceso norte</s1>
<s2>11200 Montevideo</s2>
<s3>URY</s3>
<sZ>1 aut.</sZ>
<sZ>3 aut.</sZ>
<sZ>4 aut.</sZ>
<sZ>5 aut.</sZ>
</inist:fA14>
<country>Uruguay</country>
<wicri:noRegion>11200 Montevideo</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Coppola, Leticia" sort="Coppola, Leticia" uniqKey="Coppola L" first="Leticia" last="Coppola">Leticia Coppola</name>
<affiliation wicri:level="1"><inist:fA14 i1="03"><s1>Departamento de Laboratorios de Salud Publica, Centro Nacional de Referencia de Influenza, Ministerio de Salud Publica, Alfredo Navarro 3051 acceso norte</s1>
<s2>11200 Montevideo</s2>
<s3>URY</s3>
<sZ>1 aut.</sZ>
<sZ>3 aut.</sZ>
<sZ>4 aut.</sZ>
<sZ>5 aut.</sZ>
</inist:fA14>
<country>Uruguay</country>
<wicri:noRegion>11200 Montevideo</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Chiparelli, Hector" sort="Chiparelli, Hector" uniqKey="Chiparelli H" first="Hector" last="Chiparelli">Hector Chiparelli</name>
<affiliation wicri:level="1"><inist:fA14 i1="03"><s1>Departamento de Laboratorios de Salud Publica, Centro Nacional de Referencia de Influenza, Ministerio de Salud Publica, Alfredo Navarro 3051 acceso norte</s1>
<s2>11200 Montevideo</s2>
<s3>URY</s3>
<sZ>1 aut.</sZ>
<sZ>3 aut.</sZ>
<sZ>4 aut.</sZ>
<sZ>5 aut.</sZ>
</inist:fA14>
<country>Uruguay</country>
<wicri:noRegion>11200 Montevideo</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Cristina, Juan" sort="Cristina, Juan" uniqKey="Cristina J" first="Juan" last="Cristina">Juan Cristina</name>
<affiliation wicri:level="1"><inist:fA14 i1="01"><s1>Laboratorio de Virología Molecular, Centro de Investigaciones Nucleares, Facultad de Ciencias, Iguá 4225</s1>
<s2>11400 Montevideo</s2>
<s3>URY</s3>
<sZ>1 aut.</sZ>
<sZ>2 aut.</sZ>
<sZ>6 aut.</sZ>
</inist:fA14>
<country>Uruguay</country>
<wicri:noRegion>11400 Montevideo</wicri:noRegion>
</affiliation>
</author>
</analytic>
<series><title level="j" type="main">Archives of virology</title>
<title level="j" type="abbreviated">Arch. virol.</title>
<idno type="ISSN">0304-8608</idno>
<imprint><date when="2011">2011</date>
</imprint>
</series>
</biblStruct>
</sourceDesc>
<seriesStmt><title level="j" type="main">Archives of virology</title>
<title level="j" type="abbreviated">Arch. virol.</title>
<idno type="ISSN">0304-8608</idno>
</seriesStmt>
</fileDesc>
<profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Genetic vaccine</term>
<term>Influenza A virus</term>
<term>Phylogeny</term>
<term>Vaccine strain</term>
</keywords>
<keywords scheme="Pascal" xml:lang="fr"><term>Virus grippal A</term>
<term>Phylogenèse</term>
<term>Vaccin génétique</term>
<term>Souche vaccinale</term>
</keywords>
</textClass>
</profileDesc>
</teiHeader>
<front><div type="abstract" xml:lang="en">The first influenza pandemic of this century was declared in April of 2009, with the emergence of a novel H1N1 influenza A virus strain (H1N1pdm). Understanding the evolution of H1N1pdm strains within the South American region is essential for studying global diversification, emergence and resistance, as well as determining vaccine efficacy. In order to gain insight into these matters, phylogenetic analysis was performed using 29 hemagglutinin (HA) gene sequences from H1N1pdm strains isolated in South America. The results of these studies revealed that clade 7 was the dominant H1N1pdm lineage in South America. None of the strains isolated in South America clustered together with the 2010 H1 vaccine strain. Amino acid substitutions P100S, S220T and 1338V were found in almost all HAs of South American H1N1pdm strains.</div>
</front>
</TEI>
<affiliations><list><country><li>Uruguay</li>
</country>
</list>
<tree><country name="Uruguay"><noRegion><name sortKey="Goni, Natalia" sort="Goni, Natalia" uniqKey="Goni N" first="Natalia" last="Goni">Natalia Goni</name>
</noRegion>
<name sortKey="Chiparelli, Hector" sort="Chiparelli, Hector" uniqKey="Chiparelli H" first="Hector" last="Chiparelli">Hector Chiparelli</name>
<name sortKey="Coppola, Leticia" sort="Coppola, Leticia" uniqKey="Coppola L" first="Leticia" last="Coppola">Leticia Coppola</name>
<name sortKey="Cristina, Juan" sort="Cristina, Juan" uniqKey="Cristina J" first="Juan" last="Cristina">Juan Cristina</name>
<name sortKey="Goni, Natalia" sort="Goni, Natalia" uniqKey="Goni N" first="Natalia" last="Goni">Natalia Goni</name>
<name sortKey="Moratorio, Gonzalo" sort="Moratorio, Gonzalo" uniqKey="Moratorio G" first="Gonzalo" last="Moratorio">Gonzalo Moratorio</name>
<name sortKey="Moratorio, Gonzalo" sort="Moratorio, Gonzalo" uniqKey="Moratorio G" first="Gonzalo" last="Moratorio">Gonzalo Moratorio</name>
<name sortKey="Ramas, Viviana" sort="Ramas, Viviana" uniqKey="Ramas V" first="Viviana" last="Ramas">Viviana Ramas</name>
</country>
</tree>
</affiliations>
</record>

Pour manipuler ce document sous Unix (Dilib)

EXPLOR_STEP=$WICRI_ROOT/Sante/explor/PandemieGrippaleV1/Data/2020/Analysis

HfdSelect -h $EXPLOR_STEP/biblio.hfd -nk 000241 | SxmlIndent | more

HfdSelect -h $EXPLOR_AREA/Data/2020/Analysis/biblio.hfd -nk 000241 | SxmlIndent | more

Pour mettre un lien sur cette page dans le réseau Wicri

{{Explor lien
   |wiki=    Sante
   |area=    PandemieGrippaleV1
   |flux=    2020
   |étape=   Analysis
   |type=    RBID
   |clé=     Pascal:11-0095379
   |texte=   Phylogenetic analysis of pandemic 2009 influenza A virus circulating in the South American region: genetic relationships and vaccine strain match
}}

This area was generated with Dilib version V0.6.34.
Data generation: Wed Jun 10 11:04:28 2020. Site generation: Sun Mar 28 09:10:28 2021

	Serveur d'exploration sur les pandémies grippales
	Attention, ce site est en cours de développement ! Attention, site généré par des moyens informatiques à partir de corpus bruts. Les informations ne sont donc pas validées.

Serveur d'exploration sur les pandémies grippales

Phylogenetic analysis of pandemic 2009 influenza A virus circulating in the South American region: genetic relationships and vaccine strain match

Phylogenetic analysis of pandemic 2009 influenza A virus circulating in the South American region: genetic relationships and vaccine strain match

Source :

Descripteurs français

English descriptors

Abstract

Links toward previous steps (curation, corpus...)

Links to Exploration step

Le document en format XML

Pour manipuler ce document sous Unix (Dilib)

Pour mettre un lien sur cette page dans le réseau Wicri